E. Jimenez-Ruiz, B. Cuenca-Grau, U. Sattler, T. Schneider and R. Berlanga. "Safe and Economic Re-Use of Ontologies: A Logic-Based Methodology and Tool Support". In Proc. of the 5th European Semantic Web Conference (ESWC 2008), Tenerife, Spain, June 2008. LNCS 5021, ISBN: 978-3-540-68233-2, pp. 185-199. http://dx.doi.org/10.1007/978-3-540-68234-9_16. Adapted versions have also been accepted in following workshops:

• The 21st International Workshop on Description Logics (DL2008). Dresden, Germany, May 2008. Volume 353 of CEUR WS Proceedings, ISSN 1613-0073.

• The 13th edition of the Spanish Conference on Software Engineering and Databases (JISBD 2008), Gijón, Spain. ISBN: 978-84-612-5820-8. "ProSÉ: A Protégé plugin for Reusing Ontologies, Safe and Économique". Demo Paper, pp. 449-452. [paper]

A. Jimeno-Yepes, E. Jimenez-Ruiz, V. Lee, S. Gaudan, R.Berlanga, D. Rebholz-Schuhmann: Assessment of diseases named entity recognition on a corpus of annotated sentences. Accepted in International Symposium on Languages in Biology and Medicine (LBM), December 2007. Published in BMC Bioinformatics 2008, 9(Suppl 3):S3, doi:10.1186/1471-2105-9-S3-S3.

R. Berlanga, E. Jimenez-Ruiz, V. Nebot, D. Manset, A. Branson, T. Hauer, R. McClatchey, D. Rogulin, J. Shamdasani, S. Zillner and J. Freund. "Medical Data Integration and the Semantic Annotation of Medical Protocols". In Proceedings of 21th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2008), Jyväskylä, Finland, 2008. IEEE CS Press, ISBN 978-0-7695-3165-6, pp. 644-649. http://doi.ieeecomputersociety.org/10.1109/CBMS.2008.90

I. Sanz and E. Jimenez-Ruiz."Ontologías en Informática". Chapter in Amparo Alcina (ed.) "Terminología y sociedad del Conocimiento". Publicacions de la Universitat Jaume I [in press]

M. Mesiti, E. Jimenez-Ruiz, I. Sanz, R. Berlanga, G. Valentini, P. Perlasca and D. Manset. "Data Integration Issues and Opportunities in Biological XML Data Management". Chapter in Eric Pardede (ed.), "Open and Novel Issues in XML Database Applications: Future Directions and Advanced Technologies.". Publisher IGI Global [in press]. An adapted versions was also accepted in:

• M. Mesiti, E. Jiménez-Ruiz, I. Sanz, R. Berlanga, G. Valentini, P. Perlasca and D. Manset. "XML-based approaches for the integration of heterogeneous Bio-molecular data". Accepted in the Network Tools and Applications in Biology Workshop, NETTAB, 2008 Workshop on Bioinformatics Methods for Biomedical Complex System Applications.

R. Berlanga, H. Anaya-Sánchez, A. Pons-Porrata, E. Jiménez-Ruiz. Conceptual Subtopic Identification in the Medical Domain. In the 11th Ibero-American Conference on Artificial Intelligence (IBERAMIA 2008). http://dx.doi.org/10.1007/978-3-540-88309-8_32. LNCS 5290, pp. 312-321.

Ernesto Jiménez-Ruiz, Rafael Berlanga, Victoria Nebot, Ismael Sanz: OntoPath: A Language for Retrieving Ontology Fragments. In Robert Meersman and Zahir Tari editors, Proceedings of On the Move to Meaningful Internet Systems 2007: CoopIS, DOA, ODBASE, GADA, and IS, Springer, Heidelberg, pp. 897-914, LNCS 4803, doi:10.1007/978-3-540-76848-7_60, 2007

Ernesto Jiménez-Ruiz, Victoria Nebot, Rafael Berlanga, Ismael Sanz and Alfonso Rios: A Protege Plug-in-based System to Manage and Query large Domain Ontologies. 10th International Protégé Conference, July 15-18, 2007, Budapest, Hungary. 

E. Jimenez-Ruiz, R. Berlanga, I. Sanz, R. McClatchey, R. Danger, D. Manset, J. Paraire, A. Rios: The Management and Integration of Biomedical Knowledge: Application in the Health-e-Child Project (Position Paper). In OnToContent'06, 1st International Workshop on Ontology content and evaluation in Enterprise. LNCS Num. 4278. pp. 1062-1067. doi:10.1007/11915072_8, October 2006.

Ernesto Jiménez, Rafael Berlanga, Ismael Sanz, and Roxana Danger: A Methodology for Vertical Integration over Biomedical Knowledge. In JIDBD'06, XI Spanish Conference on Software Engineering and Databases, October 2006.

E. Jiménez-Ruiz, R. Berlanga. A View-based Methodology for Collaborative Ontology Engineering: an Approach for Complex Applications (VIMethCOE). In 1st International Workshop (WETICE workshops) on Semantic Technologies in Collaborative Applications (STICA), June 2006. ISBN 0-7695-2623-3. http://doi.ieeecomputersociety.org/10.1109/WETICE.2006.13. Selected "best workshop paper" based on reviews.

E. Jiménez, R. Berlanga, I. Sanz, M. J. Aramburu, R. Danger: OntoPathView: A Simple View Definition Language for the Collaborative Development of Ontologies. In B. López et al. (Eds.): Artificial Intelligence Research and Development, pages 429-436. IOS Press, 2005. ISBN 1-58603-560-6. [OntoPathView.pdf]

E. Jiménez, R. Marín, P. J. Sanz. A Soft Computing Classifier Based On Fourier Descriptors Within Online Robots Context. International Conference On Systems, Man And Cybernetics. IEEE SMC 2004. The Hague, The Netherlands, October 2004. ISBN 0-7803-8567-5, pp. 4838-4843. [FD_ANN_paper.pdf] [FD_ANN_Report.pdf]